Circ RNA wrap – a flexible pipeline for circ RNA identification, transcript prediction, and abundance estimation

Snap Angle Prediction for 360$^{\circ}$ Panorama

360◦ panoramas are a rich medium, yet notoriously difficult to visualize in the 2D image plane. We explore how intelligent rotations of a spherical image may enable content-aware projection with fewer perceptible distortions. Whereas existing approaches assume the viewpoint is fixed, intuitively some viewing angles within the sphere preserve high-level objects better than others. To discover th...

CIRC Prover

CIRC is an automated circular coinductive prover that is implemented as an extension of Maude. CIRC implements the circularity principle, which generalizes circular coinductive deduction [4] and can be expressed in plain English as follows. Assume that each equation of interest (to be proved) e admits a frozen form fr(e) and a set of derived equations, its derivatives, Der(e). The circularity p...

Transcript assembly and abundance estimation with high-throughput RNA sequencing

Title of dissertation: TRANSCRIPT ASSEMBLY AND ABUNDANCE ESTIMATION WITH HIGH-THROUGHPUT RNA SEQUENCING Bruce C. Trapnell, Jr., Doctor of Philosophy, 2010 Dissertation directed by: Professor Steven Salzberg Department of Computer Science We present algorithms and statistical methods for the reconstruction and abundance estimation of transcript sequences from high throughput RNA sequencing (“RNA...

CIRC Tutorial

CIRC lesson_praise (GS)

Tonya ha s a b i g ma th t e s t t omor r ow and sh e n e ed s t o s t udy t on i gh t . W hi l e a t t h e g r o c e r y s t o r e s h e s e e s a Ginkgo B i l oba ad v e r t i s emen t t ha t c l a ims i t w i l l imp r o v e h e r memo r y. B e c au s e s h e wan t s t o d o w e l l o n h e r t e s t , s h e buy s t h e Ginkgo B i l oba , g o e s h ome , and r e v i ew s t h e s ame ma th sh...